Zhou Lab

Mathew B., Jacobson J.R., Berdyshev E., Huang Y., Sun X., Zhao Y., Gerhold L.M., Siegler J., Evenoski C., Wang T., Zhou T., Zaidi R., Moreno-Vinasco L., Bittman R., Chen C.T., Lariviere P.J., Sammani S., Lussier Y.A., Dudek S.M., Natarajan V., Weichselbaum R.R., and Garcia J.G., Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. FASEB J., 25, 3388-3400, 2011. doi:10.1096/fj.11-183970

 

Ma S.F., Xie L., Pino-Yanes M., Sammani S., Wade M.S., Letsiou E., Siegler J., Wang T., Infusino G., Kittles R.A., Flores C., Zhou T., Prabhakar B.S., Moreno-Vinasco L., Villar J., Jacobson J.R., Dudek S.M., and Garcia J.G., Type 2 deiodinase and host responses of sepsis and acute lung injury. Am. J. Respir. Cell Mol. Biol., 45, 1203-1211, 2011. doi:10.1165/rcmb.2011-0179OC

 
Sammani S., Park K.S., Zaidi S.R., Mathew B., Wang T., Huang Y., Zhou T., Lussier Y.A., Husain A.N., Moreno-Vinasco L., Vigneswaran W.T., and Garcia J.G., A sphingosine 1-phosphate 1 receptor agonist modulates brain death-induced neurogenic pulmonary injury. Am. J. Respir. Cell Mol. Biol., 45, 1022-1027, 2011. doi:10.1165/rcmb.2010-0267OC

 
Ramsey D.C., Scherrer M.P., Zhou T., and Wilke C.O., The relationship between relative solvent accessibility and evolutionary rate in protein evolution. Genetics, 188, 479-488, 2011. doi:10.1534/genetics.111.128025

 
Zhou T. and Wilke C.O., Reduced stability of mRNA secondary-structure near the translation-initiation site in dsDNA viruses. BMC Evol. Biol., 11, 59, 2011. doi:10.1186/1471-2148-11-59

 
Zhou T., Garcia J.G.N., and Zhang W., Integrating microRNAs into a system biology approach to acute lung injury. Transl. Res., 157, 180-190, 2011. doi:10.1016/j.trsl.2011.01.010

Wang Z., Wang Y., Zhou T., Chen S., Morris D., Magalhães R.D.M., Li M., Wang S., Wang H., Xie Y., McSwiggin H., Oliver D., Yuan S., Zheng H., Mohammed J., Lai E.C., McCarrey J.R., and Yan W., The rapidly evolving X-linked MIR-506 family fine-tunes spermatogenesis to enhance sperm competition. Elife, 13, RP90203, 2024. doi.org/10.7554/eLife.90203.2

 

Chen Q. and Zhou T., Emerging functional principles of tRNA-derived small RNAs and other regulatory small RNAs. J. Biol. Chem., 299, 105225, 2023. doi.org/10.1016/j.jbc.2023.105225

 

Liu J., Shi J., Hernandez R., Li X., Konchadi P., Miyake Y., Chen Q., Zhou T., and Zhou C., Paternal phthalate exposure-elicited offspring metabolic disorders are associated with altered sperm small RNAs in mice. Environ. Int., 172, 107769, 2023.  doi:10.1016/j.envint.2023.107769

 

Wang H., Wang Z., Zhou T., Morris D., Chen S., Li M., Wang Y., Zheng H., Fu W., and Yan W., Small RNA shuffling between murine sperm and their cytoplasmic droplets during epididymal maturation. Dev. Cell, 58, 779-790, 2023.  doi:10.1016/j.devcel.2023.03.010

 

Shi J., Zhou T.*, and Chen Q.*, Exploring the expanding universe of small RNAs. Nature Cell Biol., 24, 415-423, 2022. (*co-corresponding author) doi:10.1038/s41556-022-00880-5

 

Zhu L.*, Zhou T.*, Iyyappan R., Ming H., Dvoran M., Wang Y., Chen Q., Roberts R.M., Susor A., and Jiang Z., High-resolution ribosome profiling reveals translational selectivity for transcripts in bovine preimplantation embryo development. Development, 149, dev200819, 2022. (*co-first author)  doi:10.1242/dev.200819

Chen Q.*, Zhang X., Shi J., Yan M., and Zhou T.*, Origins and evolving functionalities of tRNA-derived small RNAs. Trends Biochem. Sci., 46, 790-804, 2021. (*co-corresponding author) doi:10.1016/j.tibs.2021.05.001

 

Shi J., Zhang Y., Tan D., Zhang X., Yan M., Zhang Y., Franklin R., Shahbazi M., Mackinlay K., Liu S., Kuhle B., James E.R., Zhang L., Qu Y., Zhai Q., Zhao W., Zhao L., Zhou C., Gu W., Murn J., Guo J., Carrell D.T., Wang Y., Chen X., Cairns B.R., Yang X.L., Schimmel P., Zernicka-Goetz M., Cheloufi S.*, Zhang Y.*, Zhou T.*, and Chen Q.*, PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications. Nature Cell Biol., 23, 424-436, 2021. (*co-corresponding author) doi:10.1038/s41556-021-00652-7

 

Casanova N.G.*, Zhou T.*, Gonzalez-Garay M., Lussier Y.A., Sweiss N., Ma S.F., Noth I., Knox K.S., and Garcia J.G.N., MicroRNA and protein-coding gene expression analysis in idiopathic pulmonary fibrosis yields novel biomarker signatures associated to survival. Transl. Res., 228, 1-12, 2021. (*co-first author)  doi:10.1016/j.trsl.2020.07.009